YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	U603_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.45
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METLLSPRAL SPPLNPKPLS LHQTKPTSHS LSLSKPTTFS GPKHLSTRFT KPESRNWLID  60
   61 AKQGLAALAL SLTLTFSPVG TALASEFNIL NDGPPKETYV VDDAGVLSRV TKSDLKKLLS 120
  121 DLEYRKKLRL NFITVRKLTS KADAFEYADQ VLEKWYPSIE EGNNKGIVVL ITSQKEGAIT 180
  181 GGPAFIEAVG ENILDATVSE NLPVLATDEK YNEAVYSSAK RLVAAIDGQP DPGGPTVKDS 240
  241 KRESNFKTKE ETDEKRGQFS LVVGGLLVIA FVVPMAQYFA YVSRK

Type	Start	End	Confidence
Signal Peptide	1	84	0.49
N-region	1	75
H-region	76	81
C-region	82	84
Cleavage Site	84	85
Non-Cytoplasmic	85	260	0.82
Transmembrane Helix	261	281	0.89
Cytoplasmic	282	285	0.66