YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	WAXS1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEKFRNLIE VWISALISLS YCYYISSKLS KGVLRLLSIL PVCILFLVLP LFLSCVHFCA  60
   61 ISVLFLSWLA NFKLLLFAFD EGPLFPLPPK LSRFICFACL PIKIRQDPSP NAIPNLHPKP 120
  121 MPKWVLAVKI LVLGVLLHVY EYRDGLPRFV VLALYCLHIY LEVELVLVFV GAVVSTLLGC 180
  181 NIEPVFNEPY LATSLQDFWS RRWNLMVSAV LRSTVHIPVQ RFFKRILSPD GAMFAGVMAS 240
  241 FFVSGLMHEL LYFYMIRKPP TWEVTCFFVL HGAATATEIA VKRTQWLRPP HRAVSGLVVL 300
  301 TFVSVTGVWL FLAQVLRNNV HEKAIGECLL VLDLAKLFTS S

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.36
Transmembrane Helix	8	25	0.77
Cytoplasmic	26	35	0.48
Transmembrane Helix	36	69	0.80
Non-Cytoplasmic	70	120	0.52
Transmembrane Helix	121	142	0.73
Cytoplasmic	143	155	0.49
Transmembrane Helix	156	180	0.72
Non-Cytoplasmic	181	201	0.48
Transmembrane Helix	202	216	0.41
Cytoplasmic	217	230	0.51
Transmembrane Helix	231	252	0.89
Non-Cytoplasmic	253	260	0.56
Transmembrane Helix	261	281	0.65
Cytoplasmic	282	292	0.62
Transmembrane Helix	293	313	0.94
Non-Cytoplasmic	314	341	0.67