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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: AB14G_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.87
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPQNCIAPRP EEDGGVMVQG LPDMSDTQSK SVLAFPTITS QPGLQMSMYP ITLKFEEVVY  60
   61 KVKIEQTSQC MGSWKSKEKT ILNGITGMVC PGEFLAMLGP SGSGKTTLLS ALGGRLSKTF 120
  121 SGKVMYNGQP FSGCIKRRTG FVAQDDVLYP HLTVWETLFF TALLRLPSSL TRDEKAEHVD 180
  181 RVIAELGLNR CTNSMIGGPL FRGISGGEKK RVSIGQEMLI NPSLLLLDEP TSGLDSTTAH 240
  241 RIVTTIKRLA SGGRTVVTTI HQPSSRIYHM FDKVVLLSEG SPIYYGAASS AVEYFSSLGF 300
  301 STSLTVNPAD LLLDLANGIP PDTQKETSEQ EQKTVKETLV SAYEKNISTK LKAELCNAES 360
  361 HSYEYTKAAA KNLKSEQWCT TWWYQFTVLL QRGVRERRFE SFNKLRIFQV ISVAFLGGLL 420
  421 WWHTPKSHIQ DRTALLFFFS VFWGFYPLYN AVFTFPQEKR MLIKERSSGM YRLSSYFMAR 480
  481 NVGDLPLELA LPTAFVFIIY WMGGLKPDPT TFILSLLVVL YSVLVAQGLG LAFGALLMNI 540
  541 KQATTLASVT TLVFLIAGGY YVQQIPPFIV WLKYLSYSYY CYKLLLGIQY TDDDYYECSK 600
  601 GVWCRVGDFP AIKSMGLNNL WIDVFVMGVM LVGYRLMAYM ALHRVKLR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle