YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PUP18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	36	0.99
Transmembrane Helix	37	59	0.93
Non-Cytoplasmic	60	80	0.91
Transmembrane Helix	81	101	0.92
Cytoplasmic	102	114	0.90
Transmembrane Helix	115	138	0.85
Non-Cytoplasmic	139	146	0.71
Transmembrane Helix	147	167	0.93
Cytoplasmic	168	172	0.86
Transmembrane Helix	173	192	0.90
Non-Cytoplasmic	193	209	0.85
Transmembrane Helix	210	231	0.94
Cytoplasmic	232	249	0.94
Transmembrane Helix	250	272	0.92
Non-Cytoplasmic	273	291	0.94
Transmembrane Helix	292	316	0.84
Cytoplasmic	317	323	0.63
Transmembrane Helix	324	343	0.91
Non-Cytoplasmic	344	349	0.82
Transmembrane Helix	350	370	0.93
Cytoplasmic	371	390	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMTEASKQT TAEGSANPEP DQILSPRRSL ELKQKKWWIS VSLCIFLVLL GDSLVMLLLN  60
   61 FFYVQDNRED SDQDLQYRGT WLQALVQNAA FPLLIPLFFI FPSPKQNQET TNTRFLSFRL 120
  121 ILLYISLGVL VAAHSKLFAL GKLYANFGVF TLISATQLIF TAIFAAIINR FKFTRWIILS 180
  181 IIGSILIYVF GSPEFGGEPD ENEEFYSIQA WLTFAASVAF ALSLCLFQLC FEKVLVKTKR 240
  241 YGNKKVFRMV IEMQICVSFV ATVVCLVGLF ASGENKELQG DSHRFKKGET YYVLSLIGLA 300
  301 LSWQVWAVGL MGLVLYVSGV FGDVVHMCTS PLVALFVVLA FDFMDDEFSW PRIGTLIATV 360
  361 VALGSYFYTL HKRNKKKMVE LYQTENNIDV