YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CRPM1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPMKSLRNDH GTLKAMIGSD FNELTIAAKN LATHAFTLTG LGFGTSVLEW VASIAAIYLL  60
   61 VLDRTNWKTN MLTSLLIPYI FFSLPSLIFG IFRGEIGKWI AFVAVVVQLF FPKHAREYLE 120
  121 LPVALVLLAV VAPNLIAGTF RDSWIGLAIC LGIGCYLLQE HIRASGGFRN AFTKANGISN 180
  181 TVGIICLVVF PVWALIF

Type	Start	End	Confidence
Cytoplasmic	1	35	0.58
Transmembrane Helix	36	62	0.81
Non-Cytoplasmic	63	70	0.53
Transmembrane Helix	71	97	0.77
Cytoplasmic	98	117	0.55
Transmembrane Helix	118	137	0.84
Non-Cytoplasmic	138	143	0.70
Transmembrane Helix	144	162	0.87
Cytoplasmic	163	175	0.78
Transmembrane Helix	176	196	0.92
Non-Cytoplasmic	197	197	0.94