YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALD1_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSLMFFSSA SPLCSSPSKI PKASLDFEMK KLGGSTKLVR NVNLEKLKNN YLFPEINRRE  60
   61 LEHIEKHPNV QLISLGTGDT TEPIPEQITS HMSNFAHGLS TVEGYRGYGL EQGNKTLRKA 120
  121 IAETFYRDLH VKSNEVFVSD GAQSDISRLQ LLLGSNVTIA VQDPTFPAYI DSSVIIGQTG 180
  181 HFHEKTKKYQ NVVYMPCGPN NSFFPDLAMT PRTDVIFFCS PNNPTGYVAS RKQLHQLVDF 240
  241 AKTNGSIIIF DSAYAAFIED GSPRSIYEIP GAREVAIEVS SFSKFAGFTG VRLGWSIIPD 300
  301 ELLYSNGFPI INDFHRIVTT SFNGASNIAQ AGGLACLSSG GLKEIRSVNN YYKENRKILM 360
  361 DTLVSLGLKV YGGVNAPYLW VHFKGSKSWD VFNEILENTH IITVPGSGFG PGGEEYLRIS 420
  421 GFGRRDHIVE ASKRLQNFFN TRTKHFTYLS STSNTN

Type	Start	End	Confidence
Signal Peptide	1	17	0.77
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	456	0.99