YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PR1B5_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVSTNPPVLP ISTTATDTTN QPPIVTAVVE SQPPVVRAFV NGVTETVCGG LSRSRPWSEL  60
   61 LDRSAFTKPD SLSEAGTRFR KNSSYFRVNY VCIVALILGF SLLAHPFSLI LLLCLAASWL 120
  121 FLYLFRPSDR PLILFGRSFS EYETLGGLIL STIAVIFFTS VGSVLISALM IGIATICVHG 180
  181 AFRAPDDLFL DEQDHAASGF LSFIGVPAIP SVAPSASSAA SPV

Type	Start	End	Confidence
Cytoplasmic	1	84	0.97
Transmembrane Helix	85	104	0.87
Non-Cytoplasmic	105	107	0.64
Transmembrane Helix	108	125	0.91
Cytoplasmic	126	144	0.70
Transmembrane Helix	145	178	0.82
Non-Cytoplasmic	179	195	0.59
Transmembrane Helix	196	217	0.77
Cytoplasmic	218	223	0.51