YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLB_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADEHKHEES SPNLDPAVEV VERESLMEKL SEKIHHKGDS SSSSSSDDEN EKKSSSSSPK  60
   61 SLKSKVYRLF GRERPVHKVL GGGKPADIFM WKDKKMSGGV FGGATVAWVL FELMEYHLLT 120
  121 LLCHVMIVAL AVLFLWSNAT MFIHKSPPKI PEVHIPEEPL LQLASGLRIE INRGISSLRE 180
  181 IASGRDIKKF LSAIAGLWVL SILGGCYSFL TLAYIALVLL FTVPLFYDKY EDKVDSYGEK 240
  241 AMAELKKQYA VLDAKVFSKI PRGPLKDKKK D

Type	Start	End	Confidence
Cytoplasmic	1	95	0.96
Transmembrane Helix	96	111	0.91
Non-Cytoplasmic	112	117	0.62
Transmembrane Helix	118	140	0.87
Cytoplasmic	141	193	0.94
Transmembrane Helix	194	217	0.91
Non-Cytoplasmic	218	271	0.93