YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HA22C_ARATH
Protein type:	Transmembrane
Type Confidence:	0.91
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSNSGDDNV LQVLIKNFDV LALPLVTLVY PLYASVKAIE TRSLPEDEQW LTYWVLYALI  60
   61 SLFELTFSKP LEWFPIWPYM KLFGICWLVL PQFNGAEHIY KHFIRPFYRD PQRATTKIWY 120
  121 VPHKKFNFFP KRDDDDILTA AEKYMEQHGT EAFERMIVKK DSYERGRSSR GINNHMIFDD 180
  181 DYRY

Type	Start	End	Confidence
Non-Cytoplasmic	1	19	0.53
Transmembrane Helix	20	34	0.57
Cytoplasmic	35	49	0.69
Transmembrane Helix	50	68	0.82
Non-Cytoplasmic	69	76	0.72
Transmembrane Helix	77	96	0.70
Cytoplasmic	97	184	0.78