YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	DIT21_ARATH
Protein type:	Transmembrane
Type Confidence:	0.83
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	92	0.48
Transmembrane Helix	93	114	0.86
Non-Cytoplasmic	115	125	0.38
Transmembrane Helix	126	151	0.84
Cytoplasmic	152	160	0.32
Transmembrane Helix	161	185	0.82
Non-Cytoplasmic	186	209	0.37
Transmembrane Helix	210	242	0.55
Cytoplasmic	243	269	0.50
Transmembrane Helix	270	285	0.45
Non-Cytoplasmic	286	307	0.68
Transmembrane Helix	308	328	0.78
Cytoplasmic	329	357	0.84
Transmembrane Helix	358	376	0.84
Non-Cytoplasmic	377	382	0.60
Transmembrane Helix	383	402	0.91
Cytoplasmic	403	413	0.75
Transmembrane Helix	414	436	0.88
Non-Cytoplasmic	437	449	0.79
Transmembrane Helix	450	471	0.89
Cytoplasmic	472	479	0.76
Transmembrane Helix	480	503	0.89
Non-Cytoplasmic	504	536	0.75
Transmembrane Helix	537	557	0.94
Cytoplasmic	558	563	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESFALHSLS TTATSTLLSH HHHHHPSRLS LLRRTSSRSP PSTISLRSLS VQPLSFPLLK  60
   61 PIPRFSTRIA AAPQDNAPPP PPPSPSPSPS PQGAKLIPLI LSISVGLILR FAVPVPEGVT 120
  121 PQGWQLLSIF LSTIAGLVLS PLPVGAWAFI GLTASIVTKT LSFSAAFSAF TSEVIWLIVI 180
  181 SFFFARGFVK TGLGDRIATY FVKWLGKSTL GLSYGLTLSE ALIAPAMPST TARAGGIFLP 240
  241 IIKSLSLSAG SKPNDSSSRK LGSYLIQSQF QCAGNSSALF LTAAAQNLLC LKLAEELGVV 300
  301 ISNPWVSWFK AASLPAIISL LCTPLILYKL YPPETKDTPE APGIAATKLK QMGPVTKNEW 360
  361 IMVGTMLLAV TLWICGETLG IPSVVAAMIG LSILLVLGVL NWDDCLSEKS AWDTLAWFAV 420
  421 LVGMAGQLTN LGVVTWMSDC VAKVLQSLSL SWPAAFGLLQ AAYFFIHYLF ASQTGHVGAL 480
  481 FSAFLAMHIA AGVPGILAAL ALAYNTNLFG ALTHYSSGQA AVYYGAGYVD LPDVFKIGFV 540
  541 MATINAIIWG VVGTFWWKFL GLY