YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ARAD2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPKIRKPNN SSSKKVTVSV LSVFLVFVFV NTFFYPSFYS DSGSIRRNLV DSRESFHFPG  60
   61 NFRKTKVYMY ELPTNFTYGV IEQHGGEKSD DVTGLKYPGH QHMHEWYLYS DLTRPEVKRV 120
  121 GSPIVRVFDP AEADLFYVSA FSSLSLIVDS GRPGFGYSDE EMQESLVSWL ESQEWWRRNN 180
  181 GRDHVIVAGD PNALKRVMDR VKNAVLLVTD FDRLRADQGS LVKDVIIPYS HRIDAYEGEL 240
  241 GVKQRTNLLF FMGNRYRKDG GKVRDLLFKL LEKEEDVVIK RGTQSRENMR AVKQGMHTSK 300
  301 FCLHLAGDTS SACRLFDAIA SLCVPVIVSD GIELPFEDVI DYRKFSIFLR RDAALKPGFV 360
  361 VKKLRKVKPG KILKYQKVMK EVRRYFDYTH LNGSVNEIWR QVTKKIPLIK LMINREKRMI 420
  421 KRDGSDPQCS CLCSNQTGII HGV

Type	Start	End	Confidence
Cytoplasmic	1	15	0.76
Transmembrane Helix	16	35	0.73
Non-Cytoplasmic	36	443	0.99