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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: CHX20_ARATH
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.75
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPFNITSVKT SSNGVWQGDN PLNFAFPLLI VQTALIIAVS RFLAVLFKPL RQPKVIAEIV  60
   61 GGILLGPSAL GRNMAYMDRI FPKWSMPILE SVASIGLLFF LFLVGLELDL SSIRRSGKRA 120
  121 FGIAVAGITL PFIAGVGVAF VIRNTLYTAA DKPGYAEFLV FMGVALSITA FPVLARILAE 180
  181 LKLLTTQIGE TAMAAAAFND VAAWILLALA VALAGNGGEG GGEKKSPLVS LWVLLSGAGF 240
  241 VVFMLVVIRP GMKWVAKRGS PENDVVRESY VCLTLAGVMV SGFATDLIGI HSIFGAFVFG 300
  301 LTIPKDGEFG QRLIERIEDF VSGLLLPLYF ATSGLKTDVA KIRGAESWGM LGLVVVTACA 360
  361 GKIVGTFVVA VMVKVPAREA LTLGFLMNTK GLVELIVLNI GKEKKVLNDE TFAILVLMAL 420
  421 FTTFITTPTV MAIYKPARGT HRKLKDLSAS QDSTKEELRI LACLHGPANV SSLISLVESI 480
  481 RTTKILRLKL FVMHLMELTE RSSSIIMVQR ARKNGLPFVH RYRHGERHSN VIGGFEAYRQ 540
  541 LGRVAVRPIT AVSPLPTMHE DICHMADTKR VTMIILPFHK RWNADHGHSH HHQDGGGDGN 600
  601 VPENVGHGWR LVNQRVLKNA PCSVAVLVDR GLGSIEAQTL SLDGSNVVER VCVIFFGGPD 660
  661 DRESIELGGR MAEHPAVKVT VIRFLVRETL RSTAVTLRPA PSKGKEKNYA FLTTNVDPEK 720
  721 EKELDEGALE DFKSKWKEMV EYKEKEPNNI IEEILSIGQS KDFDLIVVGR GRIPSAEVAA 780
  781 LAERQAEHPE LGPIGDVLAS SINHIIPSIL VVQQHNKAHV EDITVSKIVS ESSLSINGDT 840
  841 NV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle