YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHL3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLNGAYYG PSIPPPKKVS HSHGRRGGGC GCLGDCLGCC GCCILSVIFN ILITIAVLLG  60
   61 IAALIIWLIF RPNAIKFHVT DAKLTEFTLD PTNNLRYNLD LNFTIRNPNR RIGVYYDEIE 120
  121 VRGYYGDQRF GMSNNISKFY QGHKNTTVVG TKLVGQQLVL LDGGERKDLN EDVNSQIYRI 180
  181 DAKLRLKIRF KFGLIKSWRF KPKIKCDLKV PLTSNSTSGF VFQPTKCDVD F

Type	Start	End	Confidence
Cytoplasmic	1	26	0.88
Transmembrane Helix	27	48	0.70
Non-Cytoplasmic	49	51	0.53
Transmembrane Helix	52	70	0.92
Cytoplasmic	71	231	0.76