YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CSLA3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.31
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSPFLKFFLF LYDYLSPSSF FLVQRNTLGA SLDTTDGVVR SGIIGEIIYI WKQTRIFVFI  60
   61 PILKCLVTIC LVMSLLLFIE RVYMSIVVVF VKLLRRTPEK VHKWEPINDD DLELANTNYP 120
  121 MVLIQIPMYN EKEVCQLSIG AACRLSWPLD RMIVQVLDDS TDPASKELVN AECDKWARKG 180
  181 INIMSEIRDN RIGYKAGALK AGMMHNYVKQ CEFVAIFDAD FQPDPDFLER TIPFLIHNHE 240
  241 ISLVQCRWKF VNANECLMTR MQEMSLNYHF VAEQESGSSI HAFFGFNGTA GVWRIAALNE 300
  301 AGGWKDRTTV EDMDLAVRAC LHGWKFVYVH DVEVKNELPS TFKAYRFQQH RWSCGPANLW 360
  361 RKMTMEILQN KKVSAWKKLY LIYNFFFIRK IVVHIFTFVF YCLILPTTVL FPELQVPKWA 420
  421 TVYFPTTITI LNAIATPRSL HLLVFWILFE NVMSMHRTKA TFIGLLEAGR VNEWVVTEKL 480
  481 GDTLKSKLIG KATTKLYTRF GQRLNWRELV VGLYIFFCGC YDFAYGGSYF YVYLFLQSCA 540
  541 FFVAGVGYIG TFVPTV

Type	Start	End	Confidence
Cytoplasmic	1	9	0.67
Transmembrane Helix	10	24	0.31
Non-Cytoplasmic	25	55	0.49
Transmembrane Helix	56	79	0.83
Cytoplasmic	80	390	0.70
Transmembrane Helix	391	410	0.90
Non-Cytoplasmic	411	427	0.79
Transmembrane Helix	428	449	0.88
Cytoplasmic	450	503	0.98
Transmembrane Helix	504	525	0.87
Non-Cytoplasmic	526	532	0.74
Transmembrane Helix	533	553	0.94
Cytoplasmic	554	556	0.81