YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT112_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	45	0.97
Transmembrane Helix	46	69	0.77
Non-Cytoplasmic	70	91	0.73
Transmembrane Helix	92	113	0.91
Cytoplasmic	114	124	0.89
Transmembrane Helix	125	146	0.91
Non-Cytoplasmic	147	154	0.69
Transmembrane Helix	155	174	0.87
Cytoplasmic	175	180	0.79
Transmembrane Helix	181	196	0.84
Non-Cytoplasmic	197	201	0.59
Transmembrane Helix	202	221	0.66
Cytoplasmic	222	239	0.54
Transmembrane Helix	240	259	0.94
Non-Cytoplasmic	260	275	0.59
Transmembrane Helix	276	298	0.85
Cytoplasmic	299	304	0.52
Transmembrane Helix	305	325	0.58
Non-Cytoplasmic	326	329	0.70
Transmembrane Helix	330	349	0.92
Cytoplasmic	350	361	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEAQSWTTR RMSNPRFDAA ATAAPTIVDI PGTPPHSSAS SPLKPFFLSS PTVSPTILTA  60
   61 AIIAAWFGSN IGVLLLNKYL LFYYGFRYPI FLTMTHMLSC AAYSSAVINI AGIVPRQHIL 120
  121 SRRQFLKILS LSAIFCLSVV CGNTSLRYIP VSFNQAIGAT TPFFTAVFSF LITCKTESTE 180
  181 VYLALLPVVS GIVLASNSEP SFHLFGFLIC VASTAGRALK SVVQGIILTS ESEKLHSMNL 240
  241 LLYMAPMAAC ILLPFTLYIE GNVLRVLIEK ARTDPLIIFL LAGNATVAYL VNLTNFLVTK 300
  301 HTSALTLQVL GNGKAAVAAG VSVLIFRNPV TVMGIAGFGV TIMGVVLYSE ARKRSKLLNQ 360
  361 K