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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: TRE1_ARATH
Protein type: Transmembrane
Type Confidence: 0.86
Topology Confidence: 0.57
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSYKLNNPN LLISTHTHNK LFLSSSPFNL LFSFPSFIYL KQQRSLFFFF FFFLCFSFTT  60
   61 SMLDSDTDTD SGPVVATTKL VTFLQRVQHT ALRSYPKKQT PDPKSYIDLS LKRPYSLSTI 120
  121 ESAFDDLTSE SHDQPVPVET LEKFVKEYFD GAGEDLLHHE PVDFVSDPSG FLSNVENEEV 180
  181 REWAREVHGL WRNLSCRVSD SVRESADRHT LLPLPEPVII PGSRFREVYY WDSYWVIKGL 240
  241 MTSQMFTTAK GLVTNLMSLV ETYGYALNGA RAYYTNRSQP PLLSSMVYEI YNVTKDEELV 300
  301 RKAIPLLLKE YEFWNSGKHK VVIRDANGYD HVLSRYYAMW NKPRPESSVF DEESASGFST 360
  361 MLEKQRFHRD IATAAESGCD FSTRWMRDPP NFTTMATTSV VPVDLNVFLL KMELDIAFMM 420
  421 KVSGDQNGSD RFVKASKARE KAFQTVFWNE KAGQWLDYWL SSSGEESETW KAENQNTNVF 480
  481 ASNFAPIWIN SINSDENLVK KVVTALKNSG LIAPAGILTS LTNSGQQWDS PNGWAPQQEM 540
  541 IVTGLGRSSV KEAKEMAEDI ARRWIKSNYL VYKKSGTIHE KLKVTELGEY GGGGEYMPQT 600
  601 GFGWSNGVIL AFLEEYGWPS HLSIEA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle