YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	FAH1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAQGFTVDL KKPLVFQVGH LGEDYEEWVH QPIATKEGPR FFQSDFWEFL TLTVWWAVPV  60
   61 IWLPVVVWCI SRSVSMGCSL PEIVPIVVMG IFIWTFFEYV LHRFVFHIKT KSYWGNTAHY 120
  121 LIHGCHHKHP MDHLRLVFPP TATAILCFPF WNIAKAISTP STAPALFGGG MLGYVMYDVT 180
  181 HYYLHHAQPT RPVTKNLKKY HLNHHFRIQD KGFGITSSLW DIVFGTLPTT KAPRKEQ

Type	Start	End	Confidence
Cytoplasmic	1	48	0.66
Transmembrane Helix	49	71	0.86
Non-Cytoplasmic	72	82	0.50
Transmembrane Helix	83	102	0.88
Cytoplasmic	103	135	0.63
Transmembrane Helix	136	154	0.77
Non-Cytoplasmic	155	161	0.48
Transmembrane Helix	162	184	0.65
Cytoplasmic	185	237	0.66