YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GPAT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAKISIFQA LVFLFYRFIL RRYRNSKPKY QNGPSSLLQS DLSRHTLIFN VEGALLKSDS  60
   61 LFPYFMLVAF EAGGVIRSFL LFILYPLISL MSHEMGVKVM VMVSFFGIKK EGFRAGRAVL 120
  121 PKYFLEDVGL EMFEVLKRGG KKIGVSDDLP QVMIEGFLRD YLEIDVVVGR EMKVVGGYYL 180
  181 GIMEDKTKHD LVFDELVRKE RLNTGRVIGI TSFNTSLHRY LFSQFCQEIY FVKKSDKRSW 240
  241 QTLPRSQYPK PLIFHDGRLA IKPTLMNTLV LFMWGPFAAA AAAARLFVSL CIPYSLSIPI 300
  301 LAFSGCRLTV TNDYVSSQKQ KPSQRKGCLF VCNHRTLLDP LYVAFALRKK NIKTVTYSLS 360
  361 RVSEILAPIK TVRLTRDRVS DGQAMEKLLT EGDLVVCPEG TTCREPYLLR FSPLFTEVSD 420
  421 VIVPVAVTVH VTFFYGTTAS GLKALDPLFF LLDPYPTYTI QFLDPVSGAT CQDPDGKLKF 480
  481 EVANNVQSDI GKALDFECTS LTRKDKYLIL AGNNGVVKKN

Type	Start	End	Confidence
Cytoplasmic	1	60	0.66
Transmembrane Helix	61	84	0.79
Non-Cytoplasmic	85	89	0.49
Transmembrane Helix	90	108	0.67
Cytoplasmic	109	264	0.94
Transmembrane Helix	265	288	0.79
Non-Cytoplasmic	289	520	0.61