YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SSL7_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPVLFSSRSL ILSIIVPLLI SIALYKLDTF DPAIVPSDAF TSSATSLPPL INDEFLTGAE  60
   61 FIGVGLLNIP EDIAYHKESN LIYTGCVDGW VKRVKVADSV NDSVVEDWVN TGGRPLGIAF 120
  121 GIHGEVIVAD VHKGLLNISG DGKKTELLTD EADGVKFKLT DAVTVADNGV LYFTDASYKY 180
  181 TLNQLSLDML EGKPFGRLLS FDPTTRVTKV LLKDLYFANG ITISPDQTHL IFCETPMKRC 240
  241 SKYYISEERV EVFTQSLPGY PDNIRYDGDG HYWIALPSGV TTLWNISLKY PFLRKLTAMV 300
  301 AKYGVDLMFM ENAGVLQVDL DGNPIAYYHD PKLSHIATCD KIGKYLYCGS LSQSHILRLD 360
  361 LLKYPAQNKK L

Type	Start	End	Confidence
Signal Peptide	1	23	0.89
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	371	0.98