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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: FH1_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.87
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFFLFFFYL LLSSSSDLVF ADRRVLHEPF FPIDSPPPSP PSPPPLPKLP FSSTTPPSSS  60
   61 DPNASPFFPL YPSSPPPPSP ASFASFPANI SSLIVPHATK SPPNSKKLLI VAISAVSSAA 120
  121 LVALLIALLY WRRSKRNQDL NFSDDSKTYT TDSSRRVYPP PPATAPPTRR NAEARSKQRT 180
  181 TTSSTNNNSS EFLYLGTMVN QRGIDEQSLS NNGSSSRKLE SPDLQPLPPL MKRSFRLNPD 240
  241 VGSIGEEDEE DEFYSPRGSQ SGREPLNRVG LPGQNPRSVN NDTISCSSSS SGSPGRSTFI 300
  301 SISPSMSPKR SEPKPPVIST PEPAELTDYR FVRSPSLSLA SLSSGLKNSD EVGLNQIFRS 360
  361 PTVTSLTTSP ENNKKENSPL SSTSTSPERR PNDTPEAYLR SPSHSSASTS PYRCFQKSPE 420
  421 VLPAFMSNLR QGLQSQLLSS PSNSHGGQGF LKQLDALRSR SPSSSSSSVC SSPEKASHKS 480
  481 PVTSPKLSSR NSQSLSSSPD RDFSHSLDVS PRISNISPQI LQSRVPPPPP PPPPLPLWGR 540
  541 RSQVTTKADT ISRPPSLTPP SHPFVIPSEN LPVTSSPMET PETVCASEAA EETPKPKLKA 600
  601 LHWDKVRASS DREMVWDHLR SSSFKLDEEM IETLFVAKSL NNKPNQSQTT PRCVLPSPNQ 660
  661 ENRVLDPKKA QNIAILLRAL NVTIEEVCEA LLEGNADTLG TELLESLLKM APTKEEERKL 720
  721 KAYNDDSPVK LGHAEKFLKA MLDIPFAFKR VDAMLYVANF ESEVEYLKKS FETLEAACEE 780
  781 LRNSRMFLKL LEAVLKTGNR MNVGTNRGDA HAFKLDTLLK LVDVKGADGK TTLLHFVVQE 840
  841 IIRAEGTRLS GNNTQTDDIK CRKLGLQVVS SLCSELSNVK KAAAMDSEVL SSYVSKLSQG 900
  901 IAKINEAIQV QSTITEESNS QRFSESMKTF LKRAEEEIIR VQAQESVALS LVKEITEYFH 960
  961 GNSAKEEAHP FRIFLVVRDF LGVVDRVCKE VGMINERTMV SSAHKFPVPV NPMMPQPLPG1020
 1021 LVGRRQSSSS SSSSSTSSSD EDEHNSISLV S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle