YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|12324976, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGWFMVEK ARRCLRTVFF MVAMLVSLLV SSLPVLVAIG DVLVPTFLLS SFTCLTCYGF  60
   61 KEHLSRYAFK SSLTDIPLVS LVRSFLVICV YSLSDAPALS HGPYLGTVSL CSVVSVVLLS 120
  121 VKACVFTANS QLNDQASSSP SRQRLHLKKS WGMPVLFLSS VVFALGHMVV AYRTSCRARR 180
  181 KLLYHRVDPE AVLSCKSVFS GYQKVPRSPI PLVGKASKVD GEARRKLHPS VSNDDGELPA 240
  241 RLLADLDSLF ITVRGLTVHY KICTPASPRH SISSSVEANS MLNMPEAMVG RLKLDRNILS 300
  301 MVTRNKLNHH HHRSYSSLFN NSSSLHDPLL DGLPTSPRLF KDIQEESCRE DGINVSNFGA 360
  361 TEQQDVGGNG QFGVVLVHGF GGGVFSWRHV MSSLAHQLGC VVTAFDRPGW GLTARPHKKD 420
  421 LEEREMPNPY TLDNQVDMLL AFCHEMGFAS VVLVGHDDGG LLALKAAQRL LETKDPIKVK 480
  481 GVVLLNVSLT REVVPAFARI LLHTSLGKKH LVRPLLRTEI AQVVNRRAWY DPAKMTTDVL 540
  541 RLYKAPLHVE GWDEALHEIG RLSSEMVLPT QNALSLLKAV ENLPVLVVAG AEDALVPLKS 600
  601 SQVMASKLEN SRLVAISGCG HLPHEECPKA LLAAMCPFIS RLVFSED

Type	Start	End	Confidence
Cytoplasmic	1	13	0.98
Transmembrane Helix	14	37	0.86
Non-Cytoplasmic	38	41	0.69
Transmembrane Helix	42	60	0.89
Cytoplasmic	61	75	0.77
Transmembrane Helix	76	94	0.83
Non-Cytoplasmic	95	103	0.65
Transmembrane Helix	104	126	0.85
Cytoplasmic	127	149	0.89
Transmembrane Helix	150	171	0.94
Non-Cytoplasmic	172	647	0.96