YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25406451, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.57
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	13	0.57
Transmembrane Helix	14	30	0.80
Non-Cytoplasmic	31	74	0.60
Transmembrane Helix	75	96	0.93
Cytoplasmic	97	105	0.77
Transmembrane Helix	106	128	0.90
Non-Cytoplasmic	129	144	0.91
Transmembrane Helix	145	166	0.91
Cytoplasmic	167	222	0.94
Transmembrane Helix	223	246	0.87
Non-Cytoplasmic	247	266	0.83
Transmembrane Helix	267	286	0.89
Cytoplasmic	287	298	0.77
Transmembrane Helix	299	322	0.82
Non-Cytoplasmic	323	336	0.81
Transmembrane Helix	337	357	0.79
Cytoplasmic	358	364	0.75
Transmembrane Helix	365	388	0.87
Non-Cytoplasmic	389	390	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLLELFIT SSKPVVEILL ITSVGFYMAL DGVNLLGHDA RKYLNNIVFY VFSPSLIGSR  60
   61 LADSVTYESL VKMWFMPVNV LLTFIIGSLL GWIVIVITKP PSHLRGLILG CCAAGNLGNM 120
  121 PLIIIPAVCK EKGGPFGDPE SCQKYGMGYV ALSMAMGSIY IWTYVYNLMR VLSNSPVETP 180
  181 PSVESNYDSY KVPLISSKEE ENNQKAGRWE KVKRRLVSLS QKVNLKTIFA PSTIAAMIAL 240
  241 VIGLITPLRK LIIGTEAPLR VLQDSVTLVG DGAVPAMTMI IGGNLLKGLR SSGMKMSSII 300
  301 GVLVARYVLL PMSGVLIVRG AYKLDLVTSE PLYQFVLLLQ YAVPPAMNLG TITQLFGTGE 360
  361 SECSVIMLWT YSLASIALTV WPTFFMWLVA