YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|9755647, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEMVTSFVYP PPPSILLNCM SVVGVAALAN IGWSEIRGNH LKYSKFGVSS SSPQPQKERF  60
   61 GSISSRNGML LLYTPAFLAA ASSFFVVPSD DLRFLLLKSA LALHFFKRVF EVLFIHKYSG 120
  121 GMAIDSALTI SSSYFSSTAL MLYSQNLTLG LTEPSFDMKL AGVVMFVVGI VGNLYHHVLL 180
  181 AKLRKEDGKK EYKIPKGGLF DIIICPHYLF EILVFWSFFL ISQTIYSFSF AMGTMLYLIG 240
  241 RSYATRTWYL SKFDDFPKHI KALIPFVF

Type	Start	End	Confidence
Non-Cytoplasmic	1	13	0.59
Transmembrane Helix	14	34	0.88
Cytoplasmic	35	68	0.64
Transmembrane Helix	69	87	0.88
Non-Cytoplasmic	88	93	0.53
Transmembrane Helix	94	110	0.43
Cytoplasmic	111	120	0.51
Transmembrane Helix	121	142	0.68
Non-Cytoplasmic	143	157	0.84
Transmembrane Helix	158	179	0.90
Cytoplasmic	180	196	0.86
Transmembrane Helix	197	219	0.81
Non-Cytoplasmic	220	223	0.60
Transmembrane Helix	224	243	0.82
Cytoplasmic	244	268	0.87