YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PTR18_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	68	0.76
Transmembrane Helix	69	88	0.71
Non-Cytoplasmic	89	90	0.34
Transmembrane Helix	91	105	0.59
Cytoplasmic	106	106	0.01
Transmembrane Helix	107	121	0.81
Non-Cytoplasmic	122	139	0.43
Transmembrane Helix	140	162	0.72
Cytoplasmic	163	183	0.56
Transmembrane Helix	184	205	0.94
Non-Cytoplasmic	206	210	0.54
Transmembrane Helix	211	236	0.82
Cytoplasmic	237	330	0.89
Transmembrane Helix	331	349	0.92
Non-Cytoplasmic	350	371	0.85
Transmembrane Helix	372	392	0.94
Cytoplasmic	393	411	0.89
Transmembrane Helix	412	433	0.93
Non-Cytoplasmic	434	460	0.87
Transmembrane Helix	461	483	0.75
Cytoplasmic	484	496	0.84
Transmembrane Helix	497	520	0.89
Non-Cytoplasmic	521	541	0.90
Transmembrane Helix	542	561	0.90
Cytoplasmic	562	596	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEQSKNKIS EEEKQLHGRP NRPKGGLITM PFIFANEICE KLAVVGFHAN MISYLTTQLH  60
   61 LPLTKAANTL TNFAGTSSLT PLLGAFIADS FAGRFWTITF ASIIYQIGMT LLTISAIIPT 120
  121 LRPPPCKGEE VCVVADTAQL SILYVALLLG ALGSGGIRPC VVAFGADQFD ESDPNQTTKT 180
  181 WNYFNWYYFC MGAAVLLAVT VLVWIQDNVG WGLGLGIPTV AMFLSVIAFV GGFQLYRHLV 240
  241 PAGSPFTRLI QVGVAAFRKR KLRMVSDPSL LYFNDEIDAP ISLGGKLTHT KHMSFLDKAA 300
  301 IVTEEDNLKP GQIPNHWRLS TVHRVEELKS VIRMGPIGAS GILLITAYAQ QGTFSLQQAK 360
  361 TMNRHLTNSF QIPAGSMSVF TTVAMLTTII FYDRVFVKVA RKFTGLERGI TFLHRMGIGF 420
  421 VISIIATLVA GFVEVKRKSV AIEHGLLDKP HTIVPISFLW LIPQYGLHGV AEAFMSIGHL 480
  481 EFFYDQAPES MRSTATALFW MAISIGNYVS TLLVTLVHKF SAKPDGSNWL PDNNLNRGRL 540
  541 EYFYWLITVL QAVNLVYYLW CAKIYTYKPV QVHHSKEDSS PVKEELQLSN RSLVDE