YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16974605, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGILGCDAHG DLNDAEFSKP LPSIGIYVAV ASLICGLAMA ADLIHGFRHR KFWFPCKFFS  60
   61 LNATSLTFIA VGIKLSVDLN TSMPSRQDQL AKLSSTVFVC TVMGNSMPSL GIMDNNDLLM 120
  121 NLMALGILVI TDVVNICIQL GTGAIYVFSE EHFLVVLLML LMLMILCFSA TTVPTTKRIL 180
  181 ESKYNKRYDV AMKCPLATER TVAKKIQQDL SKFWMMAHTS SPQFVMARSV TCTASGFFCL 240
  241 LSAITLGEAM VRSYFLRPRS LGFCHGDSDY KWSTSLVLVC QTTTVAIGTI APAIRWFTAV 300
  301 NFRCPIRGKK YYRDEFRIES YWTHWFSEKK QHPLSLWILK ERRYRKTAHN AKRWILDVCI 360
  361 VIQYVIVFGS KIIRYISVSC VGKILLCCHF ALRTSNTITH SESEKSDSNP SSRQDLASFV 420
  421 LHLEGEDPLV DVMVRSNREA TDHWIEKGRK KQPVNLIELL EATTPISKGF EGIAEFDSNK 480
  481 VASLAHGEPP NCWALPLVTL TSIAVALPDI KPSSLKKLLN AVNEALEYVN KFECVLDTGG 540
  541 ESVNLRKAAE VVWLGVDLYH KWFDVDLRKL SKQQRNPEET LRELMEIAKK EFSESWQMNL 600
  601 MVCMKHKPSH WPIKTLAANS MYRICQTILL TYESRDYGTG EALLRKLEST ISDIVSGCFC 660
  661 NVAQVISVKC LVSAVEVREE SVRGAALHLG RTEKILEILE RRRLPKLRCD QMKNIDEWRA 720
  721 FYKINSCECD NNNKTVYPDS DELRLTVE

Type	Start	End	Confidence
Non-Cytoplasmic	1	23	0.83
Transmembrane Helix	24	45	0.91
Cytoplasmic	46	53	0.76
Transmembrane Helix	54	77	0.80
Non-Cytoplasmic	78	89	0.82
Transmembrane Helix	90	112	0.79
Cytoplasmic	113	121	0.73
Transmembrane Helix	122	145	0.85
Non-Cytoplasmic	146	152	0.77
Transmembrane Helix	153	173	0.95
Cytoplasmic	174	223	0.91
Transmembrane Helix	224	246	0.89
Non-Cytoplasmic	247	276	0.82
Transmembrane Helix	277	299	0.74
Cytoplasmic	300	352	0.82
Transmembrane Helix	353	369	0.59
Non-Cytoplasmic	370	748	0.88