YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CCDA_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLSVNRCIT GGFVGGFSSC RLNHEKRWVR AGKHCELERE RSLVSDAVSL ERLESKSIKL  60
   61 AMLASGLGVA NLVTLSSAKA ADLKMIVLDQ ATSIYILAEG SLGDSVGNFL YSANQQANEA 120
  121 VQDQLSALSV TSLAVIFGAG LVTSLSPCTL SVLPLTLGYI GAFGSGKSRG QVIGDTVAFA 180
  181 LGLATTLALL GIVASFAGKA YGQIGQGLPV AASGLAIVMG LNLLEIIELQ LPSFFNNFDP 240
  241 RAAAANFPSS VQAYLAGLTF ALAASPCSTP VLATLLGYVA TSRDPVIGGS LLLTYTTGYV 300
  301 APLIVAASFA GALQSLLSLR KVSAWINPIS GALLLGGGLY TFLDRLFPAA TMVM

Type	Start	End	Confidence
Cytoplasmic	1	59	0.86
Transmembrane Helix	60	78	0.57
Non-Cytoplasmic	79	132	0.56
Transmembrane Helix	133	160	0.81
Cytoplasmic	161	175	0.47
Transmembrane Helix	176	197	0.92
Non-Cytoplasmic	198	204	0.48
Transmembrane Helix	205	227	0.83
Cytoplasmic	228	252	0.49
Transmembrane Helix	253	278	0.81
Non-Cytoplasmic	279	290	0.52
Transmembrane Helix	291	317	0.79
Cytoplasmic	318	323	0.50
Transmembrane Helix	324	343	0.93
Non-Cytoplasmic	344	354	0.52