YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PSAF_ARATH
Protein type:	Transmembrane
Type Confidence:	0.78
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLTIPANLV LNPRSNKSLT QSVPKSSARF VCSDDKSSSS TPQSMKAFSA AVALSSILLS  60
   61 APMPAVADIS GLTPCKDSKQ FAKREKQQIK KLESSLKLYA PESAPALALN AQIEKTKRRF 120
  121 DNYGKYGLLC GSDGLPHLIV NGDQRHWGEF ITPGILFLYI AGWIGWVGRS YLIAISGEKK 180
  181 PAMKEIIIDV PLASRIIFRG FIWPVAAYRE FLNGDLIAKD V

Type	Start	End	Confidence
Cytoplasmic	1	46	0.66
Transmembrane Helix	47	66	0.52
Non-Cytoplasmic	67	149	0.81
Transmembrane Helix	150	173	0.73
Cytoplasmic	174	221	0.60