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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: PME58_ARATH
Protein type: Transmembrane
Type Confidence: 0.89
Topology Confidence: 0.85
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDGELKKK KCIIAGVITA LLVLMVVAVG ITTSRNTSHS EKIVPVQIKT ATTAVEAVCA  60
   61 PTDYKETCVN SLMKASPDST QPLDLIKLGF NVTIRSIEDS IKKASVELTA KAANDKDTKG 120
  121 ALELCEKLMN DATDDLKKCL DNFDGFSIPQ IEDFVEDLRV WLSGSIAYQQ TCMDTFEETN 180
  181 SKLSQDMQKI FKTSRELTSN GLAMITNISN LLGEFNVTGV TGDLGKYARK LLSAEDGIPS 240
  241 WVGPNTRRLM ATKGGVKANV VVAHDGSGQY KTINEALNAV PKANQKPFVI YIKQGVYNEK 300
  301 VDVTKKMTHV TFIGDGPTKT KITGSLNYYI GKVKTYLTAT VAINGDNFTA KNIGFENTAG 360
  361 PEGHQAVALR VSADLAVFYN CQIDGYQDTL YVHSHRQFFR DCTVSGTVDF IFGDGIVVLQ 420
  421 NCNIVVRKPM KSQSCMITAQ GRSDKRESTG LVLQNCHITG EPAYIPVKSI NKAYLGRPWK 480
  481 EFSRTIIMGT TIDDVIDPAG WLPWNGDFAL NTLYYAEYEN NGPGSNQAQR VKWPGIKKLS 540
  541 PKQALRFTPA RFLRGNLWIP PNRVPYMGNF Q

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle