YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NAC62_ARATH
Protein type:	Transmembrane
Type Confidence:	0.68
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNQNLHVLSM DSLPVGLRFR PTDEELIRYY LRRKINGHDD DVKAIREIDI CKWEPWDLPD  60
   61 FSVIKTKDSE WLYFCPLDRK YPSGSRQNRA TVAGYWKATG KDRKIKSGKT NIIGVKRTLV 120
  121 FHAGRAPRGT RTNWIIHEYR ATEDDLSGTN PGQSPFVICK LFKKEELVLG EEDSKSDEVE 180
  181 EPAVSSPTVE VTKSEVSEVI KTEDVKRHDI AESSLVISGD SHSDACDEAT TAELVDFKWY 240
  241 PELESLDFTL FSPLHSQVQS ELGSSYNTFQ PGSSNFSGNN NNSFQIQTQY GTNEVDTYIS 300
  301 DFLDSILKSP DEDPEKHKYV LQSGFDVVAP DQIAQVCQQG SAVDMSNDVS VTGIQIKSRQ 360
  361 AQPSGYTNDY IAQGNGPRRL RLQSNFNGIN TKNPELQAIK REAEDTVGES IKKRCGKLMR 420
  421 SKNVTGFVFK KITSVKCSYG GLFRAAVVAV VFLMSVCSLT VDFRASAVS

Type	Start	End	Confidence
Non-Cytoplasmic	1	440	0.78
Transmembrane Helix	441	463	0.61
Cytoplasmic	464	469	0.41