YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CPP1_ARATH
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.57
Topology Confidence:	0.53
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSLLLSGS TVSSSFIAPS KPSLVRNSSK TSLLPFRNVS RSFKTVKCTV DSSYGGNVPT  60
   61 FPRTRVWDPY KRLGVSPYAS EEEIWASRNF LLQQYAGHER SEESIEGAFE KLLMSSFIRR 120
  121 KKTKINLKSK LKKKVEESPP WLKALLDFVE MPPMDTIFRR LFLFAFMGGW SIMNSAEGGP 180
  181 AFQVAVSLAA CVYFLNEKTK SLGRACLIGI GALVAGWFCG SLIIPMIPTF LIQPTWTLEL 240
  241 LTSLVAYVFL FLSCTFLK

Type	Start	End	Confidence
Signal Peptide	1	20	0.53
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	161	0.59
Transmembrane Helix	162	195	0.74
Cytoplasmic	196	204	0.85
Transmembrane Helix	205	227	0.92
Non-Cytoplasmic	228	235	0.77
Transmembrane Helix	236	257	0.91
Cytoplasmic	258	258	0.98