YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	HR4_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPIAELAVIK TVGGPLIAAA LGVGAQVIYD GFRKGKDTSI INRLGRTMES ISPVRDRIGK  60
   61 LSNVEGKPFR EVHESLTRLL EDAKSIIEKY WKLRWSRHVC RKYRYIKKLE SIELELVRVA 120
  121 REIQVHQWTD IKEMKAIQVH QWTDIKEMKA IQVDQWTDIK EMKAIQVDQW IDIKEMKAIQ 180
  181 VDQWTDIKEM KAQISEKHNK

Type	Start	End	Confidence
Signal Peptide	1	25	0.52
N-region	1	16
H-region	17	22
C-region	23	25
Cleavage Site	25	26
Non-Cytoplasmic	26	200	0.88