YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|22022566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.92
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMRSVDVYVK TLGPPVRSIL YSIFTSQQKP SSLPSLPFHF SLRSSSNIPT RCFSNVVAKS  60
   61 NSPIYDFQGF RNLFTERAIS SSTTTPVASA QPQQLQNQNQ HPAEVDEEIS MGLEDEAKLS 120
  121 IPVRAYFFST SVDLRSLIEQ NKQNFIPPTS RMTNYVVLKF GNHSDPTDTT RGRISGSESI 180
  181 YMVVFHYGSI VLFNVREHEV DEYLKVVERH ASGLLPEMRK DEYEVRENPN LDTWMEVGRD 240
  241 FIRLQFLNTD GIRTIGCVLG QSIALDYYGR QVDGMVAEFT EINRQLEITG TFTMKRKKLF 300
  301 QLVGKANVIL ADVILKLGLF ERSDIAWKDA KYGQIWEFLR DEFELTQSFA NLDYKLKFVE 360
  361 HNVRFLQEIL QNRKSATLEW LIIILISMEI AISFYNMSRA SL

Type	Start	End	Confidence
Non-Cytoplasmic	1	375	0.89
Transmembrane Helix	376	397	0.84
Cytoplasmic	398	402	0.74