YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20466726, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.92
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDGYINSKK TDDICEDVCG QGSKAAKTIS RLKCVLKGFD LRTYLFLFVL MPFGILAIYL  60
   61 HGQKFTYFFR PLWESPPKPF QTIPHYYNEN VTMESLCSLH GWGIRDSPRR VFDAVLFSNE 120
  121 KDLLTVRWNE LYPYVTQFVI LESNSTFTGL PKPLVFKSNK DQFKFVEPRL TYGTIGGRFR 180
  181 KGENPFVEEA YQRVALDQLL RIAGIQEDDL LIMSDVDEIP SAHTINLLRW CDDIPPVLHL 240
  241 QLKNYLYSFE YYVDSKSWRA SIHRYSPGKT RYAHFRQSNV MLADSGWHCS FCFRYISEFI 300
  301 FKMKAYSHSD RVRFSHYLNP RRIQDVICKG TDLFDMLPEE YTFKEIIGKM GPVPRSYSAV 360
  361 HLPSYLLYNA EQYKYLLPGN CIREKQTGFI

Type	Start	End	Confidence
Cytoplasmic	1	40	0.97
Transmembrane Helix	41	62	0.92
Non-Cytoplasmic	63	390	0.98