YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|25386549, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.95
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVLEASLSI FSFSSSSSSS KPYLFSKRSS SLKLTALSLR IPSNLSPVFS LRSGSDNSRR  60
   61 LVSVLCSVAE KETSADEETS QEEKTEETQN SNLKRKLFVF NLPWSMSVND ISELFGQCGT 120
  121 VNNVEIIRQK DGKNRGFAFV TMASGEEAQA AIDKFDTFQV SGRIISVSFA RRFKKPTPKS 180
  181 PNDLPSPAPG DTRHKLYVSN LAWKARSTHL RELFTAADFN PVSARVVFAD PEGRSSGYGF 240
  241 VSFATREEAE NAITKLNGKE IMGRPITLKF SLRSASESED GDSVEANNAS EDGDTVEDKN 300
  301 TSEENIVE

Type	Start	End	Confidence
Signal Peptide	1	19	0.94
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	308	0.99