YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|20260644, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.94
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIYLSRRSLS SLLRSGFNLR GDLTAAAVSC SSLFSDADGG IKKLHSRAGN AVLWRNSQLC  60
   61 SSQGSFFGRG GQVSGSVFRC FCSGSDTSPP SLDRKFLAQL WVADKKKLKA MEKRYKKASK 120
  121 HRNYTENDGF DVHFETVEPT VEQPPVSQSM SGLLKPKTSD EAKIATLLAR SNLLVTRDIE 180
  181 WANLVLGFEQ ENRYIVVDVC YPEAPVGSIR EQSNLLARQL LRTRRPFVAS ITDALGNELF 240
  241 RVRRPFWWLT SSIYAEIDGE EIGVVHRRWH LWRRIYDLYL GNNQFAVVEN PGFWNWTFTV 300
  301 KDADGEVLAQ IDRDWRGFGF EIFTDAGQYV IRFGKADAAA KTGPATLVEE LEVKRPLTLS 360
  361 ERAVVLTLAI SLDNDYFSRH GGWGIPFMAV GE

Type	Start	End	Confidence
Signal Peptide	1	37	0.92
N-region	1	28
H-region	29	34
C-region	35	37
Cleavage Site	37	38
Non-Cytoplasmic	38	392	0.99