YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ALMT9_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.40
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAKQGSFRH GILEKRERLL SNNGFSDFRF TDIESNDLLE NENCGRRTRL CCCCSCGNLS  60
   61 EKISGVYDDA KDVARKAWEM GVSDPRKIVF SAKIGLALTI VALLIFYQEP NPDLSRYSVW 120
  121 AILTVVVVFE FTIGATLSKG FNRALGTLSA GGLALGMAEL STLFGDWEEI FCTLSIFCIG 180
  181 FLATFMKLYP SMKAYEYGFR VFLLTYCYIL ISGFRTGQFI EVAISRFLLI ALGAGVSLGV 240
  241 NMFIYPIWAG EDLHNLVVKN FMNVATSLEG CVNGYLRCLE YERIPSKILT YQASEDPVYK 300
  301 GYRSAVESTS QEESLMSFAI WEPPHGPYKS FNYPWKNYVK LSGALKHCAF TVMALHGCIL 360
  361 SEIQAPEERR QVFRQELQRV GVEGAKLLRE LGEKVKKMEK LGPVDLLFEV HLAAEELQHK 420
  421 IDKKSYLLVN SECWEIGNRA TKESEPQELL SLEDSDPPEN HAPPIYAFKS LSEAVLEIPP 480
  481 SWGEKNHREA LNHRPTFSKQ VSWPARLVLP PHLETTNGAS PLVETTKTYE SASALSLATF 540
  541 ASLLIEFVAR LQNVVDAFKE LSQKANFKEP EIVTTGTDVE FSGERVGLGQ KIRRCFGM

Type	Start	End	Confidence
Cytoplasmic	1	88	0.98
Transmembrane Helix	89	107	0.97
Non-Cytoplasmic	108	116	0.80
Transmembrane Helix	117	137	0.91
Cytoplasmic	138	143	0.81
Transmembrane Helix	144	163	0.90
Non-Cytoplasmic	164	169	0.77
Transmembrane Helix	170	189	0.94
Cytoplasmic	190	196	0.84
Transmembrane Helix	197	217	0.84
Non-Cytoplasmic	218	226	0.60
Transmembrane Helix	227	249	0.86
Cytoplasmic	250	344	0.79
Transmembrane Helix	345	363	0.40
Non-Cytoplasmic	364	598	0.60