YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ACFR2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPVLGGFP IFMVVRVLGF IIAALVLTWT VHYRGGLALS SDNKDHIFNV HPVMMVIGLI  60
   61 LFNGEAMLAY KSVQGTKNLK KLVHLTLQLT AFILSLIGVW AALKFHIDKG IENFYSLHSW 120
  121 LGLACLFLFA FQWAAGFVTY WYPGGSRNSR ASLMPWHVFL GISIYALALV TATTGILEKV 180
  181 TFLQVNQVIT RYSTEAMLVN TMGVLILILG GFVILGVVTP VSGKDQVLTQ

Type	Start	End	Confidence
Cytoplasmic	1	11	0.59
Transmembrane Helix	12	32	0.92
Non-Cytoplasmic	33	46	0.67
Transmembrane Helix	47	70	0.84
Cytoplasmic	71	81	0.64
Transmembrane Helix	82	103	0.90
Non-Cytoplasmic	104	118	0.60
Transmembrane Helix	119	142	0.87
Cytoplasmic	143	152	0.66
Transmembrane Helix	153	177	0.86
Non-Cytoplasmic	178	196	0.67
Transmembrane Helix	197	221	0.86
Cytoplasmic	222	230	0.64