YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OCT3_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	35	0.89
Transmembrane Helix	36	53	0.83
Non-Cytoplasmic	54	121	0.90
Transmembrane Helix	122	143	0.89
Cytoplasmic	144	151	0.85
Transmembrane Helix	152	175	0.87
Non-Cytoplasmic	176	183	0.54
Transmembrane Helix	184	202	0.87
Cytoplasmic	203	209	0.84
Transmembrane Helix	210	231	0.92
Non-Cytoplasmic	232	239	0.87
Transmembrane Helix	240	259	0.95
Cytoplasmic	260	322	0.99
Transmembrane Helix	323	344	0.90
Non-Cytoplasmic	345	353	0.79
Transmembrane Helix	354	376	0.93
Cytoplasmic	377	383	0.94
Transmembrane Helix	384	403	0.95
Non-Cytoplasmic	404	410	0.73
Transmembrane Helix	411	433	0.88
Cytoplasmic	434	444	0.87
Transmembrane Helix	445	465	0.89
Non-Cytoplasmic	466	470	0.84
Transmembrane Helix	471	491	0.92
Cytoplasmic	492	518	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSTRPLLS DFNSSESNLP PPRSLEETIE RCIGDFGWAQ FLQAALVSFA WFFDAQQTFI  60
   61 TVFTDSQPMW HCDNSDRVDS VCNTSSSNLC TLPNQTWSWD LNPHVSIISE WGLQCAGSFL 120
  121 KGFPASSFFL GCLIGGLALS TLADSSLGRK NMLLLSCLIM SLSSMLTAFS TSIWVYAFLR 180
  181 FLNGCGRATI GTCALVLSTE LVGKKWRGQV GAMGFFCFTL GFLSLPMLGY INEGNSWRNL 240
  241 YVWTSIPTLI YCCLVRSFVR ESPRWLIVKG RKEEAVSILQ SIASNAITMS FTNLCFEVEN 300
  301 DQSKSNPDVY DALKILVRKS WSFRRLLAAM VVGFGIGMVY YGMPLALTNL NFNLYLGVVF 360
  361 NALSEFPAFL ITFFFIDKIN RRDALIGFTA LSGISSALIA VLGQQLGSLQ IVLELVSFFS 420
  421 ACTAFNMTLI YTIEMFPTCV RNSAISMVRQ ALVFGGVFSP VMVAAGRENQ FWSYGLFGLI 480
  481 IGLCGLFVFG LPETRGSVLC DTMDEEEYKT LAKRQFIG