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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: SD129_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.96
Topology Confidence: 0.80
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGMVLFACLL LLIIFPTCGY AAINTSSPLS IRQTLSSPGG FYELGFFSPN NTQNQYVGIW  60
   61 FKKIVPRVVV WVANRDTPVT SSAANLTISS NGSLILLDGK QDVIWSTGKA FTSNKCHAEL 120
  121 LDTGNFVVID DVSGNKLWQS FEHLGNTMLP QSSLMYDTSN GKKRVLTTWK SNSDPSPGEF 180
  181 SLEITPQIPT QGLIRRGSVP YWRCGPWAKT RFSGISGIDA SYVSPFSVVQ DTAAGTGSFS 240
  241 YSTLRNYNLS YVTLTPEGKM KILWDDGNNW KLHLSLPENP CDLYGRCGPY GLCVRSDPPK 300
  301 CECLKGFVPK SDEEWGKGNW TSGCVRRTKL SCQAKSSMKT QGKDTDIFYR MTDVKTPDLH 360
  361 QFASFLNAEQ CYQGCLGNCS CTAFAYISGI GCLVWNGELA DTVQFLSSGE FLFIRLASSE 420
  421 LAGSSRRKII VGTTVSLSIF LILVFAAIML WRYRAKQNDA WKNGFERQDV SGVNFFEMHT 480
  481 IRTATNNFSP SNKLGQGGFG PVYKGKLVDG KEIGVKRLAS SSGQGTEEFM NEITLISKLQ 540
  541 HRNLVRLLGY CIDGEEKLLI YEFMVNKSLD IFIFDPCLKF ELDWPKRFNI IQGIARGLLY 600
  601 LHRDSRLRVI HRDLKVSNIL LDDRMNPKIS DFGLARMFQG TQYQDNTRRV VGTLGYMSPE 660
  661 YAWAGLFSEK SDIYSFGVLM LEIISGKRIS RFIYGDESKG LLAYTWDSWC ETGGSNLLDR 720
  721 DLTDTCQAFE VARCVQIGLL CVQHEAVDRP NTLQVLSMLT SATDLPVPKQ PIFAVHTLND 780
  781 MPMLQANSQD FLSVNEMTES MIQGR

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle