YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|15795118, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKTTGNRDW TQIYAIYGIE QWQTLVFLLF HAFFFSLLSL LFLIYFDQIC FFLDSFFLSG  60
   61 AARLAAGFTG AVTALSAVCL LFAAANFVYS DVPLQYEMAQ RMVSSVGDWS CVKTALDLGC 120
  121 GRGILLNAVA TQLKKTGSSG RVVGLDRSKR TTLSTLRTAK LEGVQEYVTC REGDVKTLPF 180
  181 GDNYFDVVVS SVFVHTVGKE HGQKSVEAAA ERMRVLGEIV RVVKPGGLCV VWDLLHVPEY 240
  241 VRRLQELKME DIRVSERVTA FMAGSHIVSF RKPSELVAGP REVRLDWR

Type	Start	End	Confidence
Cytoplasmic	1	23	0.55
Transmembrane Helix	24	46	0.88
Non-Cytoplasmic	47	63	0.50
Transmembrane Helix	64	89	0.85
Cytoplasmic	90	288	0.56