YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|5903071, gi\|2...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNLGAAEEES AQEIHLPADI NWEMLDKSKF FVLGAALFSG VSGALYPAVL MKTRQQVCHS  60
   61 QGSCIKTAFT LVRHEGLRGL YRGFGTSLMG TIPARALYMT ALEVTKSNVG SAAVSLGLTE 120
  121 AKAAAVANAV GGLSAAMAAQ LVWTPVDVVS QRLMVQGSAG LVNASRCNYV NGFDAFRKIV 180
  181 RADGPKGLYR GFGISILTYA PSNAVWWASY SVAQRMVWGG IGCYVCKKDE ESGNNSTTMK 240
  241 PDSKTIMAVQ GVSAAIAGSV SALITMPLDT IKTRLQVLDG EDSSNNGKRG PSIGQTVRNL 300
  301 VREGGWTACY RGLGPRCASM SMSATTMITT YEFLKRLSAK NHDGFYSKS

Type	Start	End	Confidence
Non-Cytoplasmic	1	29	0.52
Transmembrane Helix	30	50	0.86
Cytoplasmic	51	79	0.59
Transmembrane Helix	80	99	0.48
Non-Cytoplasmic	100	122	0.54
Transmembrane Helix	123	144	0.61
Cytoplasmic	145	186	0.76
Transmembrane Helix	187	210	0.73
Non-Cytoplasmic	211	245	0.86
Transmembrane Helix	246	266	0.80
Cytoplasmic	267	349	0.75