YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PNC1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.84
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGVDLESVSE ATSGAIGSLL STTILYPLDT CKSKFQAEVR ARGQQKYRYL SDVMWEAISK  60
   61 GQVFSLYQGL GTKNFQSFIS QFIYFYSYSY FKRVHSERTG SKSIGTKANL LIAAAAGACT 120
  121 SVLIQPLDTA SSRMQTSEFG ESKGLWKTLT EGSWADAFDG LGISLLLTSN PAIQYTVFDQ 180
  181 LKQHLLKQKN AKAENGSSPV VLSAFMAFVL GAVSKSVATV LTYPAIRCKV MIQAADESKE 240
  241 NETKKPRRRT RKTIPGVVYA IWRKEGMLGF FKGLQAQILK TVLSSALLLM IKEKITATTW 300
  301 ILILAIRRTL FLTNTKGKLR SP

Type	Start	End	Confidence
Cytoplasmic	1	107	0.68
Transmembrane Helix	108	127	0.63
Non-Cytoplasmic	128	322	0.63