YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MRS22_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAQNGYLVPA DPSAVVTVKK KTPQASWALI DATGQSEPLD VDKYEIMHRV QIHARDLRIL  60
   61 DPNLSYPSTI LGRERAIVLN LEHIKAIITS EEVLLRDPSD ENVIPVVEEL RRRLPVGNAS 120
  121 HNGGQGDGKE IAGAQNDGDT GDEDESPFEF RALEVALEAI CSFLAARTAE LETAAYPALD 180
  181 ELTSKISSRN LDRVRKLKSA MTRLTARVQK VRDELEQLLD DDDDMADLYL SRKLSSASSP 240
  241 ISSIGEPNWY TTSPTIGSKI SRASRASLAT VHGDENDVEE LEMLLEAYFM QIDSTLNRLT 300
  301 TLREYIDDTE DYINIQLDNH RNQLIQLELV LSSGTVCLSM YSLVAGIFGM NIPYTWNDGH 360
  361 GYMFKYVVGL TGTLCVVVFV IIMSYARYKG LVGS

Type	Start	End	Confidence
Cytoplasmic	1	328	0.75
Transmembrane Helix	329	350	0.90
Non-Cytoplasmic	351	362	0.65
Transmembrane Helix	363	386	0.88
Cytoplasmic	387	394	0.69