YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	PT225_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	14	0.95
Transmembrane Helix	15	35	0.90
Non-Cytoplasmic	36	50	0.80
Transmembrane Helix	51	72	0.90
Cytoplasmic	73	83	0.91
Transmembrane Helix	84	103	0.90
Non-Cytoplasmic	104	111	0.60
Transmembrane Helix	112	133	0.87
Cytoplasmic	134	141	0.87
Transmembrane Helix	142	161	0.89
Non-Cytoplasmic	162	167	0.81
Transmembrane Helix	168	189	0.84
Cytoplasmic	190	199	0.80
Transmembrane Helix	200	220	0.93
Non-Cytoplasmic	221	234	0.79
Transmembrane Helix	235	256	0.91
Cytoplasmic	257	263	0.70
Transmembrane Helix	264	283	0.54
Non-Cytoplasmic	284	288	0.49
Transmembrane Helix	289	308	0.57
Cytoplasmic	309	347	0.85

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKGRALSDG VIKKIILSYT YVAIWIFLSF TVIVYNKYIL DKKMYNWPFP ITLTMIHMGF  60
   61 CSSLAVILIK VFKVVEPVSM SRETYLRSVV PIGALYSLSL WLSNSAYIYL SVSFIQMLKA 120
  121 LMPVAVYSIG VLLKKETFKS QTMTNMLSIS FGVAIAAYGE AKFDGWGVFL QLGAVAFEAT 180
  181 RLVLIQILLT SKGINLNPIT SLYYVAPCCL VFLSVPWIFV EFPVLRDTSS FHFDFVIFGT 240
  241 NSVCAFALNL AVFLLVGKTS ALTMNVAGVV KDWLLIAFSW SVIKDTVTPI NLFGYGLAFL 300
  301 GVGYYNHCKL QALKAKDAQK KVQASDDEAG KLLEERESEA KRNETQD