YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	RTNLD_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVEDHKHEES ILEKIVEKIH GHGDSSSLSD SDDDKKSTSS SSSSFKSKIY RLFGREKPVH  60
   61 KVLGGGKPAD IFLWRNKKVS GGVLGAVTAS WVLFELFEYH LLAFLCHFAI FALAALFLWS 120
  121 NACTFIHKST PHIPEVHIPE DPILQLVSGL RIEINRGLTL LRNIASGKDV KKFILVIAGL 180
  181 WVLSIIGSCY NFLTLFYTAT VLLFTIPVLY EKYEDKVDAY GEKAMREIKK QYAVLDEKVL 240
  241 RKVISKIPRG ALNKKKD

Type	Start	End	Confidence
Cytoplasmic	1	78	0.92
Transmembrane Helix	79	94	0.88
Non-Cytoplasmic	95	100	0.65
Transmembrane Helix	101	123	0.87
Cytoplasmic	124	172	0.94
Transmembrane Helix	173	197	0.85
Non-Cytoplasmic	198	257	0.89