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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: MSSP3_ARATH
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.60
Topology Confidence: 0.58
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSVVLVALA AAIGNMLQGW DNATIAGAVI YIKKEFHLEK EPKIEGLIVA MSLIGATLIT  60
   61 TFSGPVSDKV GRRSMLILSS VLYFLSSIVM FWSPNVYVLL FARLLDGFGI GLAVTLVPIY 120
  121 ISETAPSEIR GLLNTFPQFC GSGGMFLSYC LVFGMSLQES PSWRLMLGVL SIPSIAYFVL 180
  181 AAFFLPESPR WLVSKGRMDE ARQVLQRLRG REDVSGELAL LVEGLGVGKD TSIEEYVIGP 240
  241 DNEENEGGNE LPRKDQIKLY GPEDGQSWMA KPVKGQSSLA LASRQGSMLP RGGSLMDPLV 300
  301 TLFGSIHENL PSENMNASSR SMLFPNMGSI LGMMGRQESQ WDPERNNEDS SDQDENLNSP 360
  361 LLSPQTTEPD DYHQRTVGTM HRRQSSLFMA NVGETATATS IGGGWQLAWK YNDKVGADGK 420
  421 RVNGGLQRMY IHEETANNNT NNIPFSRRGS LLSFHPEGDG HDQVNGYVQA AALVSQASMM 480
  481 PGGKGETAML PKEVKDGPGW RELKEPGVKR ALMVGVGLQI LQQFAGINGV MYYTPQILEE 540
  541 TGVSSLLTNL GISAESASLL ISALTTLLML PCILVSMRSL MLSTIPILIL SLVTLVIGSL 600
  601 VNLGGSINAL ISTASVTVYL SCFVMGFGAI PNILCSEIFP TSVRGLCITI CALTFWICDI 660
  661 IVTYTLPVML KSIGIAGVFG IYAIVCAVAW VFVYLKVPET KGMPLEVISE FFSVGAKQQD 720
  721 AAASFLSDG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle