YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	SODM2_ARATH
Protein type:	Globular with Signal Peptide
Type Confidence:	0.98
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTVIIIIF VAIFATTLHD ARGATMEPCL ESMKTASLPD LPYAYDALEP AISEEIMRLH  60
   61 HQKHHQTYVT QYNKALNSLR SAMADGDHSS VVKLQSLIKF NGGGHVNHAI FWKNLAPVHE 120
  121 GGGKPPHDPL ASAIDAHFGS LEGLIQKMNA EGAAVQGSGW VWFGLDRELK RLVVETTANQ 180
  181 DPLVTKGSHL VPLIGIDVWE HAYYPQYKNA RAEYLKNIWT VINWKYAADV FEKHTRDLDI 240
  241 N

Type	Start	End	Confidence
Signal Peptide	1	23	0.96
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	241	0.99