YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	OPT4_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.56
Transmembrane Helix	34	55	0.87
Cytoplasmic	56	61	0.53
Transmembrane Helix	62	81	0.63
Non-Cytoplasmic	82	112	0.77
Transmembrane Helix	113	138	0.83
Cytoplasmic	139	147	0.60
Transmembrane Helix	148	169	0.88
Non-Cytoplasmic	170	176	0.77
Transmembrane Helix	177	195	0.78
Cytoplasmic	196	206	0.85
Transmembrane Helix	207	228	0.88
Non-Cytoplasmic	229	251	0.74
Transmembrane Helix	252	272	0.80
Cytoplasmic	273	279	0.53
Transmembrane Helix	280	302	0.86
Non-Cytoplasmic	303	355	0.88
Transmembrane Helix	356	377	0.93
Cytoplasmic	378	408	0.91
Transmembrane Helix	409	430	0.95
Non-Cytoplasmic	431	437	0.82
Transmembrane Helix	438	460	0.90
Cytoplasmic	461	520	0.83
Transmembrane Helix	521	542	0.91
Non-Cytoplasmic	543	592	0.81
Transmembrane Helix	593	613	0.91
Cytoplasmic	614	620	0.74
Transmembrane Helix	621	640	0.77
Non-Cytoplasmic	641	644	0.53
Transmembrane Helix	645	662	0.74
Cytoplasmic	663	671	0.66
Transmembrane Helix	672	694	0.91
Non-Cytoplasmic	695	729	0.78

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATADEFSDE DTSPIEEVRL TVTNTDDPTL PVWTFRMWFL GLISCSLLSF LNQFFSYRTE  60
   61 PLVITQITVQ VATLPIGHFL AKVLPKTRFG LPGCGSARFS LNPGPFNMKE HVLISIFANA 120
  121 GSAFGSGSAY AVGIITIIKA FYGRSISFIA GWLLIITTQV LGYGWAGLLR KYVVEPAHMW 180
  181 WPSTLVQVSL FRALHEKDDQ RMTRAKFFVI ALVCSFGWYI VPGYLFTTLT SISWVCWAFP 240
  241 RSVTAQQIGS GMRGLGLGAF TLDWTAVASF LFSPLISPFF AIANVFIGYV LLIYFVLPLA 300
  301 YWGFDSYNAT RFPIFSSHLF TSVGNTYDIP AIVNDNFELD LAKYEQQGRI NLSMFFALTY 360
  361 GLGFATIAST LTHVALFYGK EISERFRVSY KGKEDIHTRL MKRYKDIPSW WFYSMLAATL 420
  421 LISLALCVFL NDEVQMPWWG LVFASAMAFV FTLPISIITA TTNQTPGLNI ITEYAMGLIY 480
  481 PGRPIANVCF KVYGYMSMAQ AVSFLNDFKL GHYMKIPPRS MFLVQFIGTI LAGTINITVA 540
  541 WWQLNSIKNI CQEELLPPNS PWTCPGDRVF FDASVIWGLV GPKRIFGSQG NYAAMNWFFL 600
  601 GGALGPVIVW SLHKAFPKRS WIPLVNLPVL LGATAMMPPA TAVNYNSWIL VGTIFNLFVF 660
  661 RYRKSWWQRY NYVLSAAMDA GVAFMAVLLY FSVGMEEKSL DWWGTRGEHC DLAKCPTARG 720
  721 VIVDGCPVK