YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|16323326, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNPLKESRE DIANSTPHMR DNEYVRLVVA HEASPAETVL SLSQSEVQSK KFMWWLKALG  60
   61 ICAVALLLTL VFGKWGVPFV FQKVLIPILQ WEATAFGRPM LAIVLVVSLA LFPVFLIPSG 120
  121 PSMWLAGMIF GYGLGFVIIM VGTTIGMVLP YLIGLMFRDR LHQWLKRWPR QAAVLRLAAE 180
  181 GSWFHQFRVV AIFRVSPFPY TIFNYAIVVT SMRFWPYFFG SIAGMIPEAF IYIYSGRLIR 240
  241 TFADVQYGHQ RLTTVEIVYN VISLVIAVVT TVAFTVYAKR ALRELQNAEA NEDEEVQVRK 300
  301 VRFEMKNVVQ HEEDNHQRLP

Type	Start	End	Confidence
Cytoplasmic	1	52	0.75
Transmembrane Helix	53	76	0.87
Non-Cytoplasmic	77	94	0.68
Transmembrane Helix	95	117	0.89
Cytoplasmic	118	127	0.55
Transmembrane Helix	128	154	0.84
Non-Cytoplasmic	155	186	0.67
Transmembrane Helix	187	208	0.66
Cytoplasmic	209	213	0.60
Transmembrane Helix	214	236	0.86
Non-Cytoplasmic	237	256	0.66
Transmembrane Helix	257	278	0.92
Cytoplasmic	279	320	0.72