YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	GAE1_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSIEDELFP STPGKFKIDR SNRQLHRCFA STSTMFLWAL FLIALTASYL SFQSFVDSGS  60
   61 RYLTASWGGI QWEKQVRTSA QIHRSGGISV LVTGATGFVG SHVSLALRKR GDGVVGLDNF 120
  121 NNYYDPSLKR ARRSLLSSRG IFVVEGDLND AKLLAKLFDV VAFTHVMHLA AQAGVRYALE 180
  181 NPQSYVHSNI AGLVNLLEIC KAANPQPAIV WASSSSVYGL NEKVPFSESD RTDQPASLYA 240
  241 ATKKAGEEIT HTYNHIYGLA ITGLRFFTVY GPWGRPDMAY FSFTRNILQG KPITIYRGKN 300
  301 RVDLARDFTY IDDIVKGCLG SLDSSGKSTG SGGKKRGAAP YRIFNLGNTS PVTVPILVDI 360
  361 LEKHLKVKAK RNFVEMPGNG DVPFTHANIS SARNEFGYKP TTDLETGLKK FVRWYLSYYG 420
  421 YNTKAKLVH

Type	Start	End	Confidence
Cytoplasmic	1	27	0.94
Transmembrane Helix	28	50	0.87
Non-Cytoplasmic	51	429	0.70